Although bird photography can be a very rewarding activity, it can also be frustrating.
Your attempts to get a perfect shot can often be spoilt by visual obstructions like branches, or distracting backgrounds like buildings or litter, or just the long distance between you and your target bird.
Then there may be noisy dogs or unruly children to contend with (...or vice versa).
Although a few spots on a photo can be fixed by running the image through your favourite photo editing software, the source of the problem should be investigated.
If you use a DSLR, black spots are most likely caused by dirt directly on the surface of the cameras sensor.
I've noticed this problem with photos taken on my Pentax K-30 during the last few months, but only just found the time to take a closer look.